Last updated on 2024-04-25 06:54:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.11 | 19.86 | 327.04 | 346.90 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.4.11 | 18.31 | 243.43 | 261.74 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.4.11 | 435.37 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.11 | 428.00 | NOTE | |||
| r-devel-windows-x86_64 | 0.4.11 | 20.00 | 250.00 | 270.00 | NOTE | |
| r-patched-linux-x86_64 | 0.4.11 | 32.09 | 449.61 | 481.70 | NOTE | |
| r-release-linux-x86_64 | 0.4.11 | 22.18 | 447.44 | 469.62 | OK | |
| r-release-macos-arm64 | 0.4.11 | 110.00 | NOTE | |||
| r-release-windows-x86_64 | 0.4.11 | 20.00 | 244.00 | 264.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.4.11 | 122.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.4.11 | 349.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.4.11 | 28.00 | 309.00 | 337.00 | OK |
Version: 0.4.11
Check: Rd files
Result: NOTE
checkRd: (-1) survmean.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) survmean.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) survmean.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) survmean.Rd:86-88: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 0.4.11
Check: tests
Result: ERROR
Running ‘testthat.R’ [70s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
>
> if (requireNamespace("testthat")) {
+ library("testthat")
+ library("popEpi")
+ library("data.table")
+
+ using_r_devel <- grepl(pattern = "devel", x = R.version$status)
+ if (using_r_devel) {
+ ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm)
+ requireNamespace("data.table")
+ data.table::setDTthreads(threads = 1L)
+ }
+
+ testthat::test_check("popEpi")
+ }
Loading required namespace: testthat
NOTE: entry.status has been set to "DM" for all.
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <num>
1: 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
Key: <agegr>
agegr first.bad.surv.int last.bad.surv.int surv.obs
<int> <int> <int> <num>
1: 3 61 120 NaN
[ FAIL 2 | WARN 0 | SKIP 41 | PASS 269 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3',
'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3',
'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3',
'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3',
'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5',
'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3',
'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3',
'test_splitting_randomly_on_fixed_data.R:9:3',
'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3',
'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3',
'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3',
'test_survtab_observed.R:52:3', 'test_survtab_relative.R:80:5',
'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3',
'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3',
'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3',
'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3',
'test_weighter.R:99:3', 'test_weighter.R:122:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_survtab_observed.R:44:3'): surv.obs about the same as Kaplan-Meier & CIFs close to Aalen-Johansen ──
cif$V1 not equal to st$CIF_canD.
target is NULL, current is numeric
── Failure ('test_survtab_observed.R:45:3'): surv.obs about the same as Kaplan-Meier & CIFs close to Aalen-Johansen ──
cif$V2 not equal to st$CIF_othD.
target is NULL, current is numeric
[ FAIL 2 | WARN 0 | SKIP 41 | PASS 269 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc