BisRNA: Analysis of RNA Cytosine-5 Methylation

Bisulfite-treated RNA non-conversion in a set of samples is analysed as follows : each sample's non-conversion distribution is identified to a Poisson distribution. P-values adjusted for multiple testing are calculated in each sample. Combined non-conversion P-values and standard errors are calculated on the intersection of the set of samples. For further details, see C Legrand, F Tuorto, M Hartmann, R Liebers, D Jakob, M Helm and F Lyko (2017) <doi:10.1101/gr.210666.116>.

Version: 0.2.2
Depends: R (≥ 3.3.2)
Imports: MASS, graphics, stats, utils
Suggests: IHW, testthat
Published: 2017-12-15
Author: C Legrand
Maintainer: Carine Legrand <c.legrand at dkfz.de>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: BisRNA citation info
CRAN checks: BisRNA results

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Reference manual: BisRNA.pdf
Package source: BisRNA_0.2.2.tar.gz
Windows binaries: r-devel: BisRNA_0.2.1.zip, r-release: BisRNA_0.2.1.zip, r-oldrel: BisRNA_0.2.1.zip
OS X El Capitan binaries: r-release: BisRNA_0.2.2.tgz
OS X Mavericks binaries: r-oldrel: BisRNA_0.2.2.tgz
Old sources: BisRNA archive

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