Stitching and Analyzing Root Scans
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Documentation for package ‘RootscanR’ version 0.0.1
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| applyImgMask | Depict images with masking layers |
| blendImgs | Stitch images |
| checkInput | Check if the root scan directories contain everything necessary |
| cm2px | Functions for converting pixels and centimeters |
| combineStatsWithDL | Get an overview of the given root scans |
| createDepthLayerMasks | Create masking layers for the depth layers |
| dissectionLine | Create masking layers for the depth layers |
| findAvgOverlap | Find average image overlaps |
| findAvgSurface | Find the average surface level |
| findOverlap | Find image overlaps |
| findSurface | Find the surface level and split images |
| getDepthLayerInfo | Extract depth layer information from root scans |
| getDepthLayerInfo_par | Extract depth layer information from root scans (parallel) |
| getNeighborCoords | Get coordinates of neighbors of specified distance |
| getOverviewInput | Get an overview of the given root scans |
| imageCorr | Find image overlaps |
| kimuraLength | Computation of the Kimura length |
| ppcm2ppi | Functions for converting resolutions: ppi and ppcm |
| ppi2ppcm | Functions for converting resolutions: ppi and ppcm |
| px2cm | Functions for converting pixels and centimeters |
| showImgMask | Depict images with masking layers |
| skelPxWidth | Count skeleton root pixels with certain widths in the base root image |
| splitImgHoriz | Find the surface level and split images |
| stitchImgs | Stitch images |