Last updated on 2024-04-16 07:02:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1-1 | 12.89 | 593.50 | 606.39 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1-1 | 10.64 | 395.32 | 405.96 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1-1 | 727.34 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1-1 | 667.89 | OK | |||
| r-prerel-macos-arm64 | 1.1-1 | 172.00 | OK | |||
| r-prerel-windows-x86_64 | 1.1-1 | 17.00 | 390.00 | 407.00 | OK | |
| r-patched-linux-x86_64 | 1.1-1 | 14.47 | 547.91 | 562.38 | OK | |
| r-release-linux-x86_64 | 1.1-1 | 12.28 | 510.19 | 522.47 | ERROR | |
| r-release-macos-arm64 | 1.1-1 | 213.00 | OK | |||
| r-release-macos-x86_64 | 1.1-1 | 408.00 | OK | |||
| r-release-windows-x86_64 | 1.1-1 | 21.00 | 517.00 | 538.00 | OK | |
| r-oldrel-macos-arm64 | 1.1-1 | 245.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1-1 | 21.00 | 526.00 | 547.00 | OK |
Version: 1.1-1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘RBesT’
Flavor: r-release-linux-x86_64
Version: 1.1-1
Check: examples
Result: ERROR
Running examples in ‘DoseFinding-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bMCTtest
> ### Title: Performs Bayesian multiple contrast test
> ### Aliases: bMCTtest
>
> ### ** Examples
>
>
> require(RBesT)
Loading required package: RBesT
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘RBesT’
>
> ###############################
> ## Normal outcome
> ###############################
>
> data(biom)
> ## define shapes for which to calculate optimal contrasts
> doses <- c(0, 0.05, 0.2, 0.6, 1)
> modlist <- Mods(emax = 0.05, linear = NULL, logistic = c(0.5, 0.1),
+ linInt = c(0, 1, 1, 1), doses = doses)
> ## specify an informative prior for placebo, weakly informative for other arms
> plc_prior <- mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10))
Error in mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10)) :
could not find function "mixnorm"
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.1-1
Check: tests
Result: ERROR
Running ‘testgFit.R’ [2s/3s]
Running ‘testplanMod.R’ [0s/1s]
Running ‘testsDesign.R’ [4s/5s]
Running ‘testsFitting.R’ [2s/3s]
Running ‘testsMCPMod.R’ [4s/5s]
Running ‘testsMCT.R’ [5s/7s]
Running ‘testsoptContr.R’ [2s/2s]
Running ‘testsplotDRMod.R’ [0s/0s]
Running ‘testssampSize.R’ [0s/0s]
Running ‘testssamplMod.R’ [4s/4s]
Running ‘testthat.R’ [22s/28s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> ## Note: Files in this directory are old test cases that accumulated
> ## historically over time, many of them commented out for time reasons
> ## (and unorganized due to lack of anything close to testthat at the
> ## time of creation). The testthat sub-directory now contains a
> ## selected subset of these tests (with some additions) that have been
> ## brought in the testthat format.
> library(testthat)
> library(DoseFinding)
Loading required package: ggplot2
Loading required package: lattice
Loading required package: mvtnorm
> options(testthat.progress.max_fails = 100)
>
> Sys.unsetenv("R_TESTS")
> test_check("DoseFinding")
Running simulations
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[ FAIL 1 | WARN 10 | SKIP 12 | PASS 171 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (2): 'test-optContr.R:81:3', 'test-planMod.R:27:3'
• RBesT package not available (10): 'test-bMCTtest.R:57:3',
'test-bMCTtest.R:81:3', 'test-bMCTtest.R:103:3', 'test-bMCTtest.R:125:3',
'test-bMCTtest.R:147:3', 'test-bMCTtest.R:169:3', 'test-bMCTtest.R:189:3',
'test-bMCTtest.R:213:3', 'test-bMCTtest.R:228:3', 'test-bMCTtest.R:244:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bMCTtest.R:266:3'): Error message for incorrect prior arguments ──
Error in `mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10))`: could not find function "mixnorm"
[ FAIL 1 | WARN 10 | SKIP 12 | PASS 171 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64