Last updated on 2025-03-12 17:51:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 6.43 | 67.98 | 74.41 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 4.76 | 51.85 | 56.61 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 192.88 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 246.04 | OK | |||
| r-devel-macos-arm64 | 1.1.0 | 76.00 | OK | |||
| r-devel-macos-x86_64 | 1.1.0 | 137.00 | OK | |||
| r-devel-windows-x86_64 | 1.1.0 | 11.00 | 94.00 | 105.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.0 | ERROR | ||||
| r-release-linux-x86_64 | 1.0.0 | 6.33 | 95.89 | 102.22 | OK | |
| r-release-macos-arm64 | 1.1.0 | 71.00 | OK | |||
| r-release-macos-x86_64 | 1.1.0 | 346.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 7.00 | 83.00 | 90.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.0 | 134.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 297.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 8.00 | 234.00 | 242.00 | ERROR |
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘FLASHMM-vignette.Rmd’ using rmarkdown
* installing *source* package ‘FLASHMM’ ...
** this is package ‘FLASHMM’ version ‘1.0.0’
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FLASHMM)
Quitting from lines 149-197 [unnamed-chunk-3] (FLASHMM-vignette.Rmd)
Error: processing vignette 'FLASHMM-vignette.Rmd' failed with diagnostics:
unused argument (summary.stats = ss)
--- failed re-building ‘FLASHMM-vignette.Rmd’
SUMMARY: processing the following file failed:
‘FLASHMM-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'FLASHMM-vignette.Rmd' using rmarkdown
/usr/bin/tar: Child returned status 127
/usr/bin/tar: Error is not recoverable: exiting now
/usr/bin/tar: Child returned status 127
/usr/bin/tar: Error is not recoverable: exiting now
Quitting from lines 120-127 [unnamed-chunk-2] (FLASHMM-vignette.Rmd)
Error: processing vignette 'FLASHMM-vignette.Rmd' failed with diagnostics:
Failed to install 'FLASHMM' from GitHub:
length(file_list) > 0 is not TRUE
--- failed re-building 'FLASHMM-vignette.Rmd'
SUMMARY: processing the following file failed:
'FLASHMM-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘FLASHMM-vignette.Rmd’ using rmarkdown
* installing *source* package ‘FLASHMM’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘FLASHMM’
finding HTML links ... done
contrast.matrix html
lmm html
lmmfit html
lmmtest html
simuRNAseq html
sslmm html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FLASHMM)
Quitting from lines 149-197 [unnamed-chunk-3] (FLASHMM-vignette.Rmd)
Error: processing vignette 'FLASHMM-vignette.Rmd' failed with diagnostics:
unused argument (summary.stats = ss)
--- failed re-building ‘FLASHMM-vignette.Rmd’
SUMMARY: processing the following file failed:
‘FLASHMM-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'FLASHMM-vignette.Rmd' using rmarkdown
* installing *source* package 'FLASHMM' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FLASHMM)
Quitting from lines 149-197 [unnamed-chunk-3] (FLASHMM-vignette.Rmd)
Error: processing vignette 'FLASHMM-vignette.Rmd' failed with diagnostics:
unused argument (summary.stats = ss)
--- failed re-building 'FLASHMM-vignette.Rmd'
SUMMARY: processing the following file failed:
'FLASHMM-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘ExperimentHub’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘FLASHMM-vignette.Rmd’ using rmarkdown
* installing *source* package ‘FLASHMM’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FLASHMM)
trying URL 'https://bioconductor.org/packages/3.17/bioc/bin/macosx/big-sur-arm64/contrib/4.3/ExperimentHub_2.8.1.tgz'
Content type 'application/x-compressed-tar' length 426611 bytes (416 KB)
==================================================
downloaded 416 KB
Quitting from lines 226-252 [Reference dataset] (FLASHMM-vignette.Rmd)
Error: processing vignette 'FLASHMM-vignette.Rmd' failed with diagnostics:
Failed to collect lazy table.
Caused by error in `db_collect()`:
! Arguments in `...` must be used.
✖ Problematic argument:
• ..1 = Inf
ℹ Did you misspell an argument name?
--- failed re-building ‘FLASHMM-vignette.Rmd’
SUMMARY: processing the following file failed:
‘FLASHMM-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘FLASHMM-vignette.Rmd’ using rmarkdown
* installing *source* package ‘FLASHMM’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FLASHMM)
trying URL 'https://bioconductor.org/packages/3.17/bioc/bin/macosx/big-sur-x86_64/contrib/4.3/ExperimentHub_2.8.1.tgz'
Content type 'application/x-compressed-tar' length 426462 bytes (416 KB)
==================================================
downloaded 416 KB
Quitting from lines 226-252 [Reference dataset] (FLASHMM-vignette.Rmd)
Error: processing vignette 'FLASHMM-vignette.Rmd' failed with diagnostics:
Failed to collect lazy table.
Caused by error in `db_collect()`:
! Arguments in `...` must be used.
✖ Problematic argument:
• ..1 = Inf
ℹ Did you misspell an argument name?
--- failed re-building ‘FLASHMM-vignette.Rmd’
SUMMARY: processing the following file failed:
‘FLASHMM-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64