Last updated on 2025-04-15 06:51:49 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.14.2 | 58.83 | 713.01 | 771.84 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.14.2 | 41.41 | 491.90 | 533.31 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.14.2 | 1305.73 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.14.2 | 1291.42 | OK | |||
| r-devel-windows-x86_64 | 0.14.2 | 56.00 | 643.00 | 699.00 | ERROR | |
| r-patched-linux-x86_64 | 0.14.2 | 55.82 | 681.71 | 737.53 | OK | |
| r-release-linux-x86_64 | 0.14.2 | 52.79 | 682.35 | 735.14 | OK | |
| r-release-macos-arm64 | 0.14.2 | 281.00 | OK | |||
| r-release-macos-x86_64 | 0.14.2 | 550.00 | OK | |||
| r-release-windows-x86_64 | 0.14.2 | 61.00 | 670.00 | 731.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.14.2 | 288.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.14.2 | 417.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.14.2 | 76.00 | 920.00 | 996.00 | OK |
Version: 0.14.2
Check: dependencies in R code
Result: NOTE
OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.14.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: purrr
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
>
> test_check("MiscMetabar")
Starting 2 test processes
Error in `private$handle_error()`:
! testthat subprocess failed to start, stderr:
Loading required package: phyloseq
Error: package or namespace load failed for 'phyloseq' in ans[ypos] <- rep(yes, length.out = len)[ypos]:
Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'list'
Error: package 'phyloseq' could not be loaded
Caused by error:
! R session crashed with exit code 1
Backtrace:
▆
1. └─testthat::test_check("MiscMetabar")
2. └─testthat::test_dir(...)
3. └─testthat:::test_files(...)
4. └─testthat:::test_files_parallel(...)
5. ├─withr::with_dir(...)
6. │ └─base::force(code)
7. ├─testthat::with_reporter(...)
8. │ └─base::tryCatch(...)
9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".")
13. └─queue$poll(Inf)
14. └─base::lapply(...)
15. └─testthat (local) FUN(X[[i]], ...)
16. └─private$handle_error(msg, i)
17. └─rlang::abort(...)
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.14.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
Flavor: r-oldrel-macos-x86_64
Version: 0.14.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘ANCOMBC’
Flavor: r-oldrel-macos-x86_64