CRAN Package Check Results for Package betaper

Last updated on 2025-06-07 06:49:55 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-2 7.41 61.12 68.53 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-2 5.38 45.06 50.44 ERROR
r-devel-linux-x86_64-fedora-clang 1.1-2 110.25 ERROR
r-devel-linux-x86_64-fedora-gcc 1.1-2 103.34 ERROR
r-devel-windows-x86_64 1.1-2 9.00 91.00 100.00 OK
r-patched-linux-x86_64 1.1-2 7.45 57.90 65.35 OK
r-release-linux-x86_64 1.1-2 7.41 58.35 65.76 OK
r-release-macos-arm64 1.1-2 42.00 OK
r-release-macos-x86_64 1.1-2 91.00 OK
r-release-windows-x86_64 1.1-2 8.00 76.00 84.00 ERROR
r-oldrel-macos-arm64 1.1-2 40.00 OK
r-oldrel-macos-x86_64 1.1-2 74.00 OK
r-oldrel-windows-x86_64 1.1-2 10.00 93.00 103.00 ERROR

Check Details

Version: 1.1-2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Luis Cayuela <luis.cayuela@urjc.es>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Luis", family = "Cayuela", role = c("aut", "cre"), email = "luis.cayuela@urjc.es"), person(given = "Marcelino", family = "de la Cruz", role = "aut")) as necessary. Found the following URLs which should use \doi (with the DOI name only): File ‘adonis_pertables.Rd’: http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x File ‘cca_pertables.Rd’: http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x File ‘mantel_pertables.Rd’: http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x File ‘pertables.Rd’: http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x File ‘rda_pertables.Rd’: http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.1-2
Check: examples
Result: ERROR Running examples in ‘betaper-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: adonis_pertables > ### Title: Function to assess the efects of taxonomic uncertainty on > ### permutational multivariate analysis of variance using distance > ### matrices > ### Aliases: adonis_pertables print.adonis_pertables plot.adonis_pertables > ### Keywords: multivariate > > ### ** Examples > > > > > data(Amazonia) > data(soils) > > # Define a new index that includes the terms used in the \code{Amazonia} dataset to define > # undetermined taxa at different taxonomic levels > > index.Amazon <- c(paste("sp.", rep(1:20), sep=""), "Indet.", "indet.") > > # Generate a pertables object (i.e. a list of biological data tables simulated from taxonomic > # uncertainty) > ## Not run: > ##D Amazonia100 <- pertables(Amazonia, index=index.Amazon, nsim=100) > ##D > ##D # Assess the effects of taxonomic uncertainty on a PERMANOVA (i.e., adonis) test: > ##D > ##D Amazonia.adonis <- adonis_pertables(Amazonia100 ~ Ca + K + Mg + Na, data=soils) > ##D > ##D Amazonia.adonis > ##D > ##D plot(Amazonia.adonis) > ## End(Not run) > # Fast example for Rcheck > > Amazonia4.p2 <- pertables.p2(Amazonia[1:50,], index=index.Amazon, nsim=4, ncl=2, iseed=4) > set.seed(2) > Amazonia.adonis <- adonis_pertables(Amazonia4.p2 ~ Ca + K + Mg + Na, data=soils) Error in adonis(formula = fmla, data = data, permutations = permutations, : 'adonis' is defunct. Use 'adonis2' instead. See help("Defunct") and help("vegan-defunct"). Calls: adonis_pertables -> adonis -> .Defunct Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1-2
Check: examples
Result: ERROR Running examples in ‘betaper-Ex.R’ failed The error most likely occurred in: > ### Name: adonis_pertables > ### Title: Function to assess the efects of taxonomic uncertainty on > ### permutational multivariate analysis of variance using distance > ### matrices > ### Aliases: adonis_pertables print.adonis_pertables plot.adonis_pertables > ### Keywords: multivariate > > ### ** Examples > > > > > data(Amazonia) > data(soils) > > # Define a new index that includes the terms used in the \code{Amazonia} dataset to define > # undetermined taxa at different taxonomic levels > > index.Amazon <- c(paste("sp.", rep(1:20), sep=""), "Indet.", "indet.") > > # Generate a pertables object (i.e. a list of biological data tables simulated from taxonomic > # uncertainty) > ## Not run: > ##D Amazonia100 <- pertables(Amazonia, index=index.Amazon, nsim=100) > ##D > ##D # Assess the effects of taxonomic uncertainty on a PERMANOVA (i.e., adonis) test: > ##D > ##D Amazonia.adonis <- adonis_pertables(Amazonia100 ~ Ca + K + Mg + Na, data=soils) > ##D > ##D Amazonia.adonis > ##D > ##D plot(Amazonia.adonis) > ## End(Not run) > # Fast example for Rcheck > > Amazonia4.p2 <- pertables.p2(Amazonia[1:50,], index=index.Amazon, nsim=4, ncl=2, iseed=4) > set.seed(2) > Amazonia.adonis <- adonis_pertables(Amazonia4.p2 ~ Ca + K + Mg + Na, data=soils) Error in adonis(formula = fmla, data = data, permutations = permutations, : 'adonis' is defunct. Use 'adonis2' instead. See help("Defunct") and help("vegan-defunct"). Calls: adonis_pertables -> adonis -> .Defunct Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-windows-x86_64, r-oldrel-windows-x86_64