Last updated on 2024-04-26 18:55:02 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.2.0 | 130.80 | 186.04 | 316.84 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.2.0 | 94.97 | 133.96 | 228.93 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.2.0 | 435.04 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.2.0 | 423.49 | OK | |||
| r-devel-windows-x86_64 | 2.2.0 | 97.00 | 135.00 | 232.00 | ERROR | |
| r-patched-linux-x86_64 | 2.2.0 | 91.65 | 181.63 | 273.28 | OK | |
| r-release-linux-x86_64 | 2.2.0 | 82.54 | 177.81 | 260.35 | OK | |
| r-release-macos-arm64 | 2.2.0 | 92.00 | NOTE | |||
| r-release-macos-x86_64 | 2.2.0 | 172.00 | NOTE | |||
| r-release-windows-x86_64 | 2.2.0 | 92.00 | 170.00 | 262.00 | OK | |
| r-oldrel-macos-arm64 | 2.2.0 | 98.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.2.0 | 163.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.2.0 | 117.00 | 217.00 | 334.00 | OK |
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in 'fdasrvf-Ex.R' failed
The error most likely occurred in:
> ### Name: pair_align_functions_bayes
> ### Title: Align two functions
> ### Aliases: pair_align_functions_bayes
> ### Keywords: bayesian
>
> ### ** Examples
>
> out <- pair_align_functions_bayes(
+ f1 = simu_data$f[, 1],
+ f2 = simu_data$f[, 2],
+ timet = simu_data$time
+ )
Resampling as number of points on q function = 101 is not a multiple of times = 5.
Error in .Call("dpcode", PACKAGE = "fdasrvf", q1, q1L, q2L, times, cut) :
"dpcode" not available for .Call() for package "fdasrvf"
Calls: pair_align_functions_bayes -> dpcode
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.2.0
Check: tests
Result: ERROR
Running 'testthat.R' [14s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)){
+ library(fdasrvf)
+
+ testthat::test_check("fdasrvf")
+ testthat::snapshot_accept(files = NULL, path = "testthat")
+ } else{
+ stop("Need testthat to run checks")
+ }
i Initializing...
i Aligning 21 functions in SRVF space to 3 fPCA components...
i Starting iteration 1...
i Starting iteration 2...
i Starting iteration 3...
i Starting iteration 4...
i Starting iteration 5...
[1] 0.15604919 0.06564122 0.03321528 0.03182538 0.00000000 0.00000000
[7] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
[13] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
[19] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
[25] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
[31] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
[37] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
[43] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000
[49] 0.00000000 0.00000000 0.00000000
i Using lambda = 0
i Initializing...
i Computing Karcher mean of 21 functions in SRSF space...
i Entering iteration 1...
! The argument `x` is of class <fdawarp> but has not been
computed using the median as centroid type.
i Rerunning `time_warping()` with `centroid_type = "median"`...
i Using lambda = 0
i Initializing...
i Computing Karcher median of 21 functions in SRSF space...
i Entering iteration 1...
! The argument `x` is of class <fdawarp> but has not been
computed using the median as centroid type.
i Rerunning `time_warping()` with `centroid_type = "median"`...
i Using lambda = 0
i Initializing...
i Computing Karcher median of 21 functions in SRSF space...
i Entering iteration 1...
i Using lambda = 0
i Initializing...
i Computing Karcher mean of 21 functions in SRSF space...
i Entering iteration 1...
! The maximal number of iterations has been reached.
[ FAIL 7 | WARN 0 | SKIP 4 | PASS 79 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test-align-fpca.R:21:3', 'test-boxplot.R:36:3',
'test-kmeans.R:25:3', 'test-time-warping.R:30:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pair_align_functions_bayes.R:6:3'): Verify pair_align_functions_bayes() works as intended ──
Error in `.Call("dpcode", PACKAGE = "fdasrvf", q1, q1L, q2L, times, cut)`: "dpcode" not available for .Call() for package "fdasrvf"
Backtrace:
▆
1. └─fdasrvf::pair_align_functions_bayes(...) at test_pair_align_functions_bayes.R:6:3
2. └─fdasrvf:::dpcode(qt1_5[row], qt1_5, qt2_5, times, cut)
── Error ('test_pair_align_functions_expomap.R:10:3'): Verify pair_align_functions_expomap() works as intended ──
Error in `.Call("order_l2norm", PACKAGE = "fdasrvf", x, y)`: "order_l2norm" not available for .Call() for package "fdasrvf"
Backtrace:
▆
1. └─fdasrvf::pair_align_functions_expomap(...) at test_pair_align_functions_expomap.R:10:3
2. └─fdasrvf:::f.exp1(...)
3. ├─fdasrvf:::calcY(f.L2norm(g), g$y)
4. └─fdasrvf:::f.L2norm(g)
5. └─fdasrvf:::order_l2norm(f$x, f$y)
── Error ('test_pair_align_functions_expomap.R:59:3'): Verify init.coef arguments work correctly ──
Error in `.Call("order_l2norm", PACKAGE = "fdasrvf", x, y)`: "order_l2norm" not available for .Call() for package "fdasrvf"
Backtrace:
▆
1. └─fdasrvf::pair_align_functions_expomap(...) at test_pair_align_functions_expomap.R:59:3
2. └─fdasrvf:::f.exp1(...)
3. ├─fdasrvf:::calcY(f.L2norm(g), g$y)
4. └─fdasrvf:::f.L2norm(g)
5. └─fdasrvf:::order_l2norm(f$x, f$y)
── Error ('test_pair_align_functions_expomap.R:91:3'): Check calcY() works as intended ──
Error in `.Call("calcY", PACKAGE = "fdasrvf", area, gy)`: "calcY" not available for .Call() for package "fdasrvf"
Backtrace:
▆
1. ├─testthat::expect_equal(sum(fdasrvf:::calcY(2, 0:2)), 0.1155056305) at test_pair_align_functions_expomap.R:91:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─fdasrvf:::calcY(2, 0:2)
── Error ('test_pair_align_functions_expomap.R:96:3'): Check cuL2norm2() works as intended ──
Error in `.Call("cuL2norm2", PACKAGE = "fdasrvf", x, y)`: "cuL2norm2" not available for .Call() for package "fdasrvf"
Backtrace:
▆
1. ├─testthat::expect_equal(prod(fdasrvf:::cuL2norm2(0:2, 1:3)), 22.5) at test_pair_align_functions_expomap.R:96:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─fdasrvf:::cuL2norm2(0:2, 1:3)
── Error ('test_pair_align_functions_expomap.R:102:3'): Check trapzCpp() works as intended ──
Error in `.Call("trapzCpp", PACKAGE = "fdasrvf", x, y)`: "trapzCpp" not available for .Call() for package "fdasrvf"
Backtrace:
▆
1. ├─testthat::expect_equal(fdasrvf:::trapzCpp(0:2, 1:3), 4) at test_pair_align_functions_expomap.R:102:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─fdasrvf:::trapzCpp(0:2, 1:3)
── Error ('test_pair_align_functions_expomap.R:108:3'): Check order_l2norm() works as intended ──
Error in `.Call("order_l2norm", PACKAGE = "fdasrvf", x, y)`: "order_l2norm" not available for .Call() for package "fdasrvf"
Backtrace:
▆
1. ├─testthat::expect_equal(fdasrvf:::order_l2norm(0:2, 1:3), 3) at test_pair_align_functions_expomap.R:108:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─fdasrvf:::order_l2norm(0:2, 1:3)
[ FAIL 7 | WARN 0 | SKIP 4 | PASS 79 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.2.0
Check: installed package size
Result: NOTE
installed size is 7.4Mb
sub-directories of 1Mb or more:
data 2.3Mb
libs 4.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64