CRAN Package Check Results for Package malariaAtlas

Last updated on 2024-07-23 18:59:03 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.6.1	9.44	239.05	248.49	OK
r-devel-linux-x86_64-debian-gcc	1.6.1	7.39	98.12	105.51	ERROR
r-devel-linux-x86_64-fedora-clang	1.6.1			319.21	OK
r-devel-linux-x86_64-fedora-gcc	1.6.1			307.59	OK
r-devel-windows-x86_64	1.6.1	12.00	328.00	340.00	OK
r-patched-linux-x86_64	1.5.1	13.98	227.23	241.21	OK
r-release-linux-x86_64	1.6.1	5.69	227.09	232.78	OK
r-release-macos-arm64	1.6.1			161.00	OK
r-release-macos-x86_64	1.6.1			290.00	OK
r-release-windows-x86_64	1.5.1	10.00	334.00	344.00	OK
r-oldrel-macos-arm64	1.6.1			240.00	OK
r-oldrel-macos-x86_64	1.6.1			417.00	OK
r-oldrel-windows-x86_64	1.6.1	12.00	175.00	187.00	ERROR

Check Details

Version: 1.6.1
Check: tests
Result: ERROR Running ‘testthat.R’ [17s/60s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(malariaAtlas) Loading required package: ggplot2 > > test_check("malariaAtlas") [ FAIL 2 | WARN 1 | SKIP 47 | PASS 31 ] ══ Skipped tests (47) ══════════════════════════════════════════════════════════ • On CRAN (47): 'test_as.class.R:7:3', 'test_as.class.R:28:3', 'test_autoplot.MAPraster.R:8:3', 'test_autoplot.MAPraster.R:27:3', 'test_extractRaster.R:6:3', 'test_extractRaster.R:20:3', 'test_extractRaster.R:32:3', 'test_extractRaster.R:52:3', 'test_extractRaster.R:71:3', 'test_extractRaster.R:90:3', 'test_extractRaster.R:112:3', 'test_extractRaster.R:123:3', 'test_extractRaster.R:132:3', 'test_extractRaster.R:140:3', 'test_extractRaster.R:149:3', 'test_extractRaster.R:157:3', 'test_extractRaster.R:165:3', 'test_extractRaster.R:173:3', 'test_extractRaster.R:185:3', 'test_extractRaster.R:196:3', 'test_getPR.R:7:3', 'test_getPR.R:97:3', 'test_getPR.R:109:3', 'test_getPR.R:121:3', 'test_getRaster.R:5:3', 'test_getRaster.R:77:3', 'test_getRaster.R:90:3', 'test_getRaster.R:99:3', 'test_getRaster.R:110:3', 'test_getRaster.R:133:3', 'test_getShp.R:5:3', 'test_getShp.R:47:3', 'test_getShp.R:54:5', 'test_getShp.R:63:3', 'test_getVecOcc.R:7:4', 'test_getVecOcc.R:75:3', 'test_getVecOcc.R:85:3', 'test_getVecOcc.R:102:3', 'test_isAvailable.R:11:3', 'test_listData.R:11:3', 'test_listData.R:46:3', 'test_listData.R:79:3', 'test_listData.R:106:3', 'test_listData.R:148:3', 'test_plots.R:8:1', 'test_plots.R:33:1', 'test_plots.R:69:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_extractRaster.R:205:3'): Output in same order as input ───────── Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed to connect to MAP geoserver. Please try again later. If this error keeps occurring please send us an email at data.malariaatlas.org@telethonkids.org.au Backtrace: ▆ 1. └─malariaAtlas::getPR(country = c("Nigeria", "Cameroon"), species = "Pf") at test_extractRaster.R:205:3 2. └─malariaAtlas:::getLatestPRPointVersion() 3. └─malariaAtlas::listPRPointVersions(printed = FALSE) 4. └─malariaAtlas:::get_wfs_clients() 5. └─base::tryCatch(...) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) ── Error ('test_getPR.R:130:3'): Version works ───────────────────────────────── Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed to connect to MAP geoserver. Please try again later. If this error keeps occurring please send us an email at data.malariaatlas.org@telethonkids.org.au Backtrace: ▆ 1. ├─testthat::expect_message(...) at test_getPR.R:130:3 2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─malariaAtlas::getPR(species = "both", country = c("Kenya")) 7. └─malariaAtlas:::getLatestPRPointVersion() 8. └─malariaAtlas::listPRPointVersions(printed = FALSE) 9. └─malariaAtlas:::get_wfs_clients() 10. └─base::tryCatch(...) 11. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 12. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13. └─value[[3L]](cond) [ FAIL 2 | WARN 1 | SKIP 47 | PASS 31 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.6.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘overview.Rmd’ using rmarkdown Quitting from lines 42-43 [unnamed-chunk-1] (overview.Rmd) Error: processing vignette 'overview.Rmd' failed with diagnostics: Failed to connect to MAP geoserver. Please try again later. If this error keeps occurring please send us an email at data.malariaatlas.org@telethonkids.org.au --- failed re-building ‘overview.Rmd’ SUMMARY: processing the following file failed: ‘overview.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.6.1
Check: tests
Result: ERROR Running 'testthat.R' [41s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(malariaAtlas) Loading required package: ggplot2 > > test_check("malariaAtlas") [ FAIL 2 | WARN 1 | SKIP 47 | PASS 31 ] ══ Skipped tests (47) ══════════════════════════════════════════════════════════ • On CRAN (47): 'test_as.class.R:7:3', 'test_as.class.R:28:3', 'test_autoplot.MAPraster.R:8:3', 'test_autoplot.MAPraster.R:27:3', 'test_extractRaster.R:6:3', 'test_extractRaster.R:20:3', 'test_extractRaster.R:32:3', 'test_extractRaster.R:52:3', 'test_extractRaster.R:71:3', 'test_extractRaster.R:90:3', 'test_extractRaster.R:112:3', 'test_extractRaster.R:123:3', 'test_extractRaster.R:132:3', 'test_extractRaster.R:140:3', 'test_extractRaster.R:149:3', 'test_extractRaster.R:157:3', 'test_extractRaster.R:165:3', 'test_extractRaster.R:173:3', 'test_extractRaster.R:185:3', 'test_extractRaster.R:196:3', 'test_getPR.R:7:3', 'test_getPR.R:97:3', 'test_getPR.R:109:3', 'test_getPR.R:121:3', 'test_getRaster.R:5:3', 'test_getRaster.R:77:3', 'test_getRaster.R:90:3', 'test_getRaster.R:99:3', 'test_getRaster.R:110:3', 'test_getRaster.R:133:3', 'test_getShp.R:5:3', 'test_getShp.R:47:3', 'test_getShp.R:54:5', 'test_getShp.R:63:3', 'test_getVecOcc.R:7:4', 'test_getVecOcc.R:75:3', 'test_getVecOcc.R:85:3', 'test_getVecOcc.R:102:3', 'test_isAvailable.R:11:3', 'test_listData.R:11:3', 'test_listData.R:46:3', 'test_listData.R:79:3', 'test_listData.R:106:3', 'test_listData.R:148:3', 'test_plots.R:8:1', 'test_plots.R:33:1', 'test_plots.R:69:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_extractRaster.R:205:3'): Output in same order as input ───────── Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed to connect to MAP geoserver. Please try again later. If this error keeps occurring please send us an email at data.malariaatlas.org@telethonkids.org.au Backtrace: ▆ 1. └─malariaAtlas::getPR(country = c("Nigeria", "Cameroon"), species = "Pf") at test_extractRaster.R:205:3 2. └─malariaAtlas:::getLatestPRPointVersion() 3. └─malariaAtlas::listPRPointVersions(printed = FALSE) 4. └─malariaAtlas:::get_wfs_clients() 5. └─base::tryCatch(...) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) ── Error ('test_getPR.R:130:3'): Version works ───────────────────────────────── Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed to connect to MAP geoserver. Please try again later. If this error keeps occurring please send us an email at data.malariaatlas.org@telethonkids.org.au Backtrace: ▆ 1. ├─testthat::expect_message(...) at test_getPR.R:130:3 2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─malariaAtlas::getPR(species = "both", country = c("Kenya")) 7. └─malariaAtlas:::getLatestPRPointVersion() 8. └─malariaAtlas::listPRPointVersions(printed = FALSE) 9. └─malariaAtlas:::get_wfs_clients() 10. └─base::tryCatch(...) 11. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 12. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13. └─value[[3L]](cond) [ FAIL 2 | WARN 1 | SKIP 47 | PASS 31 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64

Version: 1.6.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'overview.Rmd' using rmarkdown Quitting from lines 42-43 [unnamed-chunk-1] (overview.Rmd) Error: processing vignette 'overview.Rmd' failed with diagnostics: Failed to connect to MAP geoserver. Please try again later. If this error keeps occurring please send us an email at data.malariaatlas.org@telethonkids.org.au --- failed re-building 'overview.Rmd' SUMMARY: processing the following file failed: 'overview.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64