Last updated on 2024-07-23 18:59:03 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.4.3 | 63.76 | 538.22 | 601.98 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.4.3 | 48.23 | 377.79 | 426.02 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.4.3 | 736.23 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.4.3 | 726.26 | ERROR | |||
| r-devel-windows-x86_64 | 2.4.3 | 52.00 | 345.00 | 397.00 | NOTE | |
| r-patched-linux-x86_64 | 2.4.3 | 72.89 | 481.67 | 554.56 | OK | |
| r-release-linux-x86_64 | 2.4.3 | 42.34 | 490.80 | 533.14 | OK | |
| r-release-macos-arm64 | 2.4.3 | 173.00 | OK | |||
| r-release-macos-x86_64 | 2.4.3 | 349.00 | OK | |||
| r-release-windows-x86_64 | 2.4.3 | 56.00 | 333.00 | 389.00 | OK | |
| r-oldrel-macos-arm64 | 2.4.3 | 155.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.4.3 | 341.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.4.3 | 65.00 | 459.00 | 524.00 | OK |
Version: 2.4.3
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
add_forests.Rd: sf, forest_mergeTrees, forest_mergeShrubs,
SpParamsMED
add_topography.Rd: sf, SpatRaster
create_management_scenario.Rd: defaultManagementArguments,
defaultManagementFunction
defaultPrescriptionsBySpecies.Rd: defaultManagementArguments
default_volume_function.Rd: forest
dispersal.Rd: sf, forest, SpParamsMED, defaultControl
example_ifn.Rd: sf
example_watershed.Rd: sf
extract_variables.Rd: sf, SpParamsMED, rast, forest, soil,
summary.forest
fire_regime_instance.Rd: sf
fordyn_scenario.Rd: sf, forest, soil, spwbInput, growthInput,
SpParamsMED, defaultControl, summary.fordyn,
defaultManagementFunction, defaultManagementArguments
forest_parametrization.Rd: sf, forest, rast, vect, forest_mergeTrees,
forest_mergeShrubs
initialize_landscape.Rd: spwb, growth, sf, forest, soil, SpParamsMED,
defaultControl, forest_reduceToDominant, spwbInput, growthInput
landscape_summary.Rd: sf, forest, soil, summary.forest
plot_summary.Rd: rast, ggplot
shinyplot_land.Rd: SpParamsMED, rast, sf
simulation_summary.Rd: spwb, growth, fordyn, summary.spwb, sf
soil_parametrization.Rd: sf, rast, vect
spwb_land.Rd: spwb_day, growth_day, SpatRaster, sf, forest, soil,
spwbInput, growthInput, SpParamsMED, defaultControl, fordyn
spwb_land_day.Rd: spwb_day, growth_day, rast, sf, SpParamsMED,
defaultControl
spwb_spatial.Rd: spwb, growth, fordyn, sf, forest, soil, spwbInput,
growthInput, SpParamsMED, defaultControl, spwb_day, growth_day,
summary.spwb, meteoland
spwb_spatial_day.Rd: spwb_day, growth_day, sf, SpParamsMED,
defaultControl
update_landscape.Rd: sf
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 2.4.3
Check: data for non-ASCII characters
Result: NOTE
Note: found 2 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.4.3
Check: examples
Result: ERROR
Running examples in ‘medfateland-Ex.R’ failed
The error most likely occurred in:
> ### Name: spwb_land_day
> ### Title: One-day watershed simulations
> ### Aliases: spwb_land_day growth_land_day
>
> ### ** Examples
>
> # Load example watershed data after burnin period
> data("example_watershed_burnin")
>
> # Set request for daily model results in cells number 3, 6 (outlet) and 9
> example_watershed_burnin$result_cell <- FALSE
> example_watershed_burnin$result_cell[c(3,6,9)] <- TRUE
>
> # Get bounding box to determine limits
> b <- sf::st_bbox(example_watershed_burnin)
> b
xmin ymin xmax ymax
401430 4671870 402830 4672570
>
> # Define a raster topology, using terra package,
> # with the same CRS as the watershed. In this example cells have 100 m side.
> # Coordinates in the 'sf' object are assumed to be cell centers
> r <-terra::rast(xmin = 401380, ymin = 4671820, xmax = 402880, ymax = 4672620,
+ nrow = 8, ncol = 15, crs = "epsg:32631")
>
> # Load example meteo data frame from package meteoland
> data("examplemeteo")
>
> # Load default medfate parameters
> data("SpParamsMED")
>
> # Watershed control parameters (TETIS model; Frances et al. 2007)
> ws_control <- default_watershed_control("tetis")
>
> # Launch simulation
> date <- "2001-03-01"
> sf_out <- spwb_land_day(r, example_watershed_burnin, SpParamsMED, examplemeteo,
+ date = date,
+ watershed_control = ws_control)
── Simulation of model 'spwb' over a watershed for day '2001-03-01' ────────────
ℹ Checking topology
✔ Checking topology [136ms]
ℹ Checking 'sf' data
✔ Checking 'sf' data [323ms]
ℹ Determining neighbors and discharge for TETIS
✔ Determining neighbors and discharge for TETIS [152ms]
• Hydrological model: TETIS
• Number of grid cells: 120 Number of target cells: 66
• Average cell area: 10006 m2, Total area: 120 ha, Target area: 66 ha
• Cell land use wildland: 48 agriculture: 17 artificial: 0 rock: 1 water: 0
• Cells with soil: 65
• Number of cells with daily model results requested: 3
• Number of outlet cells: 1
ℹ Building spwb input
✔ Building spwb input [71ms]
ℹ 0 cells needed initialization
Package 'meteoland' [ver. 2.2.1]
Error in medfate::spwb_day(xi$x, date, xi$meteovec, latitude = xi$latitude, :
Index out of bounds: [index='lfmcComponent'].
Calls: spwb_land_day ... .watershedDayTetis -> .f_landunit_day -> <Anonymous>
✖ 0 cells needed initialization [441ms]
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc