Last updated on 2026-01-10 17:48:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 40.20 | 814.95 | 855.15 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.05 | 534.39 | 557.44 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 71.00 | 1391.17 | 1462.17 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 64.00 | 1321.51 | 1385.51 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 35.00 | 574.00 | 609.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 50.83 | 736.83 | 787.66 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.75 | 733.56 | 770.31 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 540.00 | 577.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 119.00 | 127.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 26.00 | 803.00 | 829.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 53.00 | 618.00 | 671.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [109s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-11 00:33:58.21429: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.214594: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.217793: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.223889: Classical Scaling
> test_pipeop_isomap.R: 2026-01-11 00:33:58.236351: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.236478: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.238864: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.244933: Classical Scaling
> test_pipeop_isomap.R: 2026-01-11 00:33:58.252138: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.2523: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.256841: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.269806: embedding
> test_pipeop_isomap.R: 2026-01-11 00:33:58.270075: DONE
> test_pipeop_isomap.R: 2026-01-11 00:33:58.277209: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.277374: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.282218: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.297522: embedding
> test_pipeop_isomap.R: 2026-01-11 00:33:58.29794: DONE
> test_pipeop_isomap.R: 2026-01-11 00:33:58.331986: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.332119: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.336332: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.371939: Classical Scaling
> test_pipeop_isomap.R: 2026-01-11 00:33:58.381627: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.381852: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.390591: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.469124: embedding
> test_pipeop_isomap.R: 2026-01-11 00:33:58.470465: DONE
> test_pipeop_isomap.R: 2026-01-11 00:33:58.50277: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.502892: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.505177: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.511223: Classical Scaling
> test_pipeop_isomap.R: 2026-01-11 00:33:58.518343: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.518517: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.522954: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.537711: embedding
> test_pipeop_isomap.R: 2026-01-11 00:33:58.538114: DONE
> test_pipeop_isomap.R: 2026-01-11 00:33:58.571305: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.571441: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.573718: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.579566: Classical Scaling
> test_pipeop_isomap.R: 2026-01-11 00:33:58.591497: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.591695: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.596259: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.61097: embedding
> test_pipeop_isomap.R: 2026-01-11 00:33:58.611304: DONE
> test_pipeop_isomap.R: 2026-01-11 00:33:58.629678: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.629804: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.639653: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.646388: Classical Scaling
> test_pipeop_isomap.R: 2026-01-11 00:33:58.660152: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.660353: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.664835: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.680256: embedding
> test_pipeop_isomap.R: 2026-01-11 00:33:58.680695: DONE
> test_pipeop_isomap.R: 2026-01-11 00:33:58.70158: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.701721: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.703975: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.710002: Classical Scaling
> test_pipeop_isomap.R: 2026-01-11 00:33:58.721137: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.721296: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.725673: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.739009: embedding
> test_pipeop_isomap.R: 2026-01-11 00:33:58.739358: DONE
> test_pipeop_isomap.R: 2026-01-11 00:33:58.754706: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.7548: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.756859: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.762236: Classical Scaling
> test_pipeop_isomap.R: 2026-01-11 00:33:58.772557: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.77272: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.77656: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.789782: embedding
> test_pipeop_isomap.R: 2026-01-11 00:33:58.790075: DONE
> test_pipeop_isomap.R: 2026-01-11 00:33:58.806845: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.807024: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.809432: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.815483: Classical Scaling
> test_pipeop_isomap.R: 2026-01-11 00:33:58.834976: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.835101: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.837343: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.84345: Classical Scaling
> test_pipeop_isomap.R: 2026-01-11 00:33:58.849173: Isomap START
> test_pipeop_isomap.R: 2026-01-11 00:33:58.849294: constructing knn graph
> test_pipeop_isomap.R: 2026-01-11 00:33:58.851631: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-11 00:33:58.857686: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [318s/411s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-10 08:31:19.174088: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:19.174642: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:19.202324: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:19.239034: Classical Scaling
> test_pipeop_isomap.R: 2026-01-10 08:31:19.355593: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:19.355924: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:19.364845: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:19.405412: Classical Scaling
> test_pipeop_isomap.R: 2026-01-10 08:31:19.484953: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-10 08:31:19.485397: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:19.542214: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:19.645456: embedding
> test_pipeop_isomap.R: 2026-01-10 08:31:19.647108: DONE
> test_pipeop_isomap.R: 2026-01-10 08:31:19.691923: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-10 08:31:19.692223: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:19.737928: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:19.889024: embedding
> test_pipeop_isomap.R: 2026-01-10 08:31:19.890187: DONE
> test_pipeop_isomap.R: 2026-01-10 08:31:20.051991: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:20.052375: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:20.128304: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:20.391529: Classical Scaling
> test_pipeop_isomap.R: 2026-01-10 08:31:20.466368: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-10 08:31:20.466829: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:20.555939: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:21.120882: embedding
> test_pipeop_isomap.R: 2026-01-10 08:31:21.124932: DONE
> test_pipeop_isomap.R: 2026-01-10 08:31:21.374439: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:21.374757: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:21.382156: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:21.430585: Classical Scaling
> test_pipeop_isomap.R: 2026-01-10 08:31:21.494137: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-10 08:31:21.494637: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:21.530811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:21.663763: embedding
> test_pipeop_isomap.R: 2026-01-10 08:31:21.664934: DONE
> test_pipeop_isomap.R: 2026-01-10 08:31:21.958372: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:21.958668: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:21.965779: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:22.013204: Classical Scaling
> test_pipeop_isomap.R: 2026-01-10 08:31:22.103119: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-10 08:31:22.103657: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:22.13731: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:22.24189: embedding
> test_pipeop_isomap.R: 2026-01-10 08:31:22.243108: DONE
> test_pipeop_isomap.R: 2026-01-10 08:31:22.395373: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:22.395676: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:22.416124: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:22.462842: Classical Scaling
> test_pipeop_isomap.R: 2026-01-10 08:31:22.53908: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-10 08:31:22.539519: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:22.605387: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:22.703113: embedding
> test_pipeop_isomap.R: 2026-01-10 08:31:22.704357: DONE
> test_pipeop_isomap.R: 2026-01-10 08:31:22.84652: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:22.846827: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:22.853712: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:22.897872: Classical Scaling
> test_pipeop_isomap.R: 2026-01-10 08:31:22.982605: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-10 08:31:22.983054: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:23.008929: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:23.107781: embedding
> test_pipeop_isomap.R: 2026-01-10 08:31:23.108932: DONE
> test_pipeop_isomap.R: 2026-01-10 08:31:23.246807: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:23.247108: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:23.270743: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:23.307997: Classical Scaling
> test_pipeop_isomap.R: 2026-01-10 08:31:23.404177: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-10 08:31:23.404633: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:23.459888: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:23.565714: embedding
> test_pipeop_isomap.R: 2026-01-10 08:31:23.567014: DONE
> test_pipeop_isomap.R: 2026-01-10 08:31:23.754766: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:23.755062: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:23.778831: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:23.811345: Classical Scaling
> test_pipeop_isomap.R: 2026-01-10 08:31:23.958059: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:23.958389: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:23.9795: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:24.02149: Classical Scaling
> test_pipeop_isomap.R: 2026-01-10 08:31:24.063365: Isomap START
> test_pipeop_isomap.R: 2026-01-10 08:31:24.063661: constructing knn graph
> test_pipeop_isomap.R: 2026-01-10 08:31:24.070516: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-10 08:31:24.131753: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [279s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-05 17:10:18.000803: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.001822: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.016234: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.038918: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:18.114544: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.115168: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.126832: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.14891: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:18.189564: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.190254: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.294737: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.335578: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:18.336862: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:18.38209: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.382775: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.403685: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.44051: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:18.441906: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:18.562249: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.562857: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.585138: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.690194: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:18.739394: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.740079: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.779494: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.980606: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:18.985685: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:19.204969: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.20559: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.215899: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.236987: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:19.289005: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.289876: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.307619: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.353702: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:19.355303: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:19.511482: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.511936: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.51863: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.533563: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:19.595101: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.596039: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.614963: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.666046: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:19.667642: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:19.781182: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.781789: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.799444: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.815658: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:19.881228: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.882259: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.900811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.937499: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:19.9387: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:20.04102: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.04162: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.067441: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.089866: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.169186: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.170107: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.186432: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.230027: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:20.231546: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:20.34159: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.342098: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.34929: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.365845: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.41623: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.416922: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.442262: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.491627: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:20.493363: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:20.62114: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.621785: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.631884: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.649447: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.785893: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.786638: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.798355: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.819076: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.852864: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.85349: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.864854: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.897752: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64