Last updated on 2025-07-23 06:51:08 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.4 | 35.52 | 386.04 | 421.56 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.4 | 25.48 | 266.65 | 292.13 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.4 | 660.17 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.4 | 642.11 | OK | |||
| r-devel-windows-x86_64 | 0.1.4 | 36.00 | 514.00 | 550.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.4 | 34.60 | 363.35 | 397.95 | OK | |
| r-release-linux-x86_64 | 0.1.4 | 35.76 | 367.85 | 403.61 | OK | |
| r-release-macos-arm64 | 0.1.4 | 214.00 | OK | |||
| r-release-macos-x86_64 | 0.1.4 | 465.00 | OK | |||
| r-release-windows-x86_64 | 0.1.4 | 34.00 | 525.00 | 559.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.4 | 187.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.4 | 430.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.4 | 49.00 | 678.00 | 727.00 | ERROR |
Version: 0.1.4
Check: examples
Result: ERROR
Running examples in 'rnaCrosslinkOO-Ex.R' failed
The error most likely occurred in:
> ### Name: plotClusterAgreementHeat
> ### Title: Plot a heatmap that plots the agreements between replicates
> ### after clusterrnaCrosslink has been performed
> ### Aliases: plotClusterAgreementHeat
> ### plotClusterAgreementHeat,rnaCrosslinkDataSet-method
>
> ### ** Examples
>
>
> cds = makeExamplernaCrosslinkDataSet()
********************************************
***** rnaCrosslink-OO ******
********************************************
*****-------*******************-------******
***** Reading SampleTable ******
***** Detected 2 Samples ******
***** detected group c:: 2 *****
***** detected group s:: 1 *****
**** Sample Names: s1 c1 **** **** Sample Names: s1 c1 **** **** Sample Names: s1 c1 **** **** Sample Names: s1 c1 ****
***** Reading Input Files *****
***** Checking Subsetting Options *****
***** No user subsetting chosen *****
***** Checking Sampling Options *****
***** No user sampling chosen *****
***** Getting RNAs of Interest ******
***** RNA of interest + Host RNA *****
***** RNA of interest Alone *****
***** Making Matrices ******
***** RNA Size: 83 *****
***** Creating object *****
*****-------*******************-------******
********************************************
********************************************
>
>
> clusteredCds = clusterrnaCrosslink(cds,
+ cores = 1,
+ stepCount = 1,
+ clusterCutoff = 0)
********************************************
**** transcript1 *****
**** 83 nt ****
**** Assessing Long Range ****
**** Sampling Long Range ****
Error in serverSocket(port = port) :
creation of server socket failed: port 11668 cannot be opened
Calls: clusterrnaCrosslink ... clusterrnaCrosslink -> makeCluster -> makePSOCKcluster -> serverSocket
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'rnaCrosslinkOO.Rmd' using rmarkdown
File rnaCrosslinkProtocol.jpg not found in resource path
Error: processing vignette 'rnaCrosslinkOO.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'rnaCrosslinkOO.Rmd'
SUMMARY: processing the following file failed:
'rnaCrosslinkOO.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64