Last updated on 2025-07-27 06:49:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 54.71 | 153.69 | 208.40 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.1 | 39.14 | 124.42 | 163.56 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.1 | 491.11 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.1 | 493.94 | ERROR | |||
| r-devel-windows-x86_64 | 0.2.1 | 54.00 | 211.00 | 265.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.0 | 54.40 | 152.84 | 207.24 | NOTE | |
| r-release-linux-x86_64 | 0.2.1 | 56.02 | 163.74 | 219.76 | ERROR | |
| r-release-macos-arm64 | 0.2.0 | 100.00 | NOTE | |||
| r-release-macos-x86_64 | 0.2.1 | 414.00 | OK | |||
| r-release-windows-x86_64 | 0.2.1 | 55.00 | 219.00 | 274.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.0 | 115.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.2.1 | 397.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.2.1 | 65.00 | 345.00 | 410.00 | OK |
Version: 0.2.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘plotting.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64, r-release-macos-arm64
Version: 0.2.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘mouse.Rmd’ using rmarkdown
trying URL 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60361&format=file&file=GSE60361%5FC1%2D3005%2DExpression%2Etxt%2Egz'
Content type 'text/html' length 13683 bytes (13 KB)
==================================================
downloaded 13 KB
Quitting from mouse.Rmd:38-77 [load-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
▆
1. └─GEOquery::getGEO("GSE60361")
2. └─GEOquery:::getAndParseGSEMatrices(...)
3. └─GEOquery:::getDirListing(sprintf(gdsurl, stub, GEO))
4. ├─xml2::read_html(url)
5. └─xml2:::read_html.default(url)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
9. └─xml2:::read_xml.character(...)
10. └─xml2:::read_xml.connection(...)
11. ├─base::open(x, "rb")
12. └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mouse.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘mouse.Rmd’
--- re-building ‘pbmc.Rmd’ using rmarkdown
trying URL 'https://cf.10xgenomics.com/samples/cell-arc/2.0.0/pbmc_granulocyte_sorted_3k/pbmc_granulocyte_sorted_3k_filtered_feature_bc_matrix.h5'
Content type 'binary/octet-stream' length 38844318 bytes (37.0 MB)
==================================================
downloaded 37.0 MB
|
| | 0%
|
|========= | 12%
|
|================== | 25%
|
|========================== | 38%
|
|=================================== | 50%
|
|============================================ | 62%
|
|==================================================== | 75%
|
|============================================================= | 88%
|
|======================================================================| 100%
trying URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds'
Content type 'application/octet-stream' length 15045381 bytes (14.3 MB)
==================================================
downloaded 14.3 MB
--- finished re-building ‘pbmc.Rmd’
SUMMARY: processing the following file failed:
‘mouse.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 0.2.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘mouse.Rmd’ using rmarkdown
trying URL 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60361&format=file&file=GSE60361%5FC1%2D3005%2DExpression%2Etxt%2Egz'
Content type 'application/octet-stream' length 11239106 bytes (10.7 MB)
==================================================
downloaded 10.7 MB
|
| | 0%
|
|================== | 25%
|
|=================================== | 50%
|
|==================================================== | 75%
|
|======================================================================| 100%
trying URL 'https://resources.aertslab.org/cistarget/tf_lists/allTFs_mm.txt'
Content type 'text/plain' length 11726 bytes (11 KB)
==================================================
downloaded 11 KB
trying URL 'https://github.com/scmethods/scregclust/raw/main/datasets/mouse_scregclust.rds'
Quitting from mouse.Rmd:124-140 [run-scregclust]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://github.com/scmethods/scregclust/raw/main/datasets/mouse_scregclust.rds'
---
Backtrace:
▆
1. └─utils::download.file(url, fit_path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mouse.Rmd' failed with diagnostics:
cannot open URL 'https://github.com/scmethods/scregclust/raw/main/datasets/mouse_scregclust.rds'
--- failed re-building ‘mouse.Rmd’
--- re-building ‘pbmc.Rmd’ using rmarkdown
trying URL 'https://cf.10xgenomics.com/samples/cell-arc/2.0.0/pbmc_granulocyte_sorted_3k/pbmc_granulocyte_sorted_3k_filtered_feature_bc_matrix.h5'
Content type 'binary/octet-stream' length 38844318 bytes (37.0 MB)
==================================================
downloaded 37.0 MB
|
| | 0%
|
|========= | 12%
|
|================== | 25%
|
|========================== | 38%
|
|=================================== | 50%
|
|============================================ | 62%
|
|==================================================== | 75%
|
|============================================================= | 88%
|
|======================================================================| 100%
trying URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds'
Quitting from pbmc.Rmd:134-149 [run-scregclust]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds'
---
Backtrace:
▆
1. └─utils::download.file(url, fit_path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'pbmc.Rmd' failed with diagnostics:
cannot open URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds'
--- failed re-building ‘pbmc.Rmd’
SUMMARY: processing the following files failed:
‘mouse.Rmd’ ‘pbmc.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'mouse.Rmd' using rmarkdown
trying URL 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60361&format=file&file=GSE60361%5FC1%2D3005%2DExpression%2Etxt%2Egz'
Content type 'text/html' length 13683 bytes (13 KB)
==================================================
downloaded 13 KB
Quitting from mouse.Rmd:38-77 [load-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
▆
1. └─GEOquery::getGEO("GSE60361")
2. └─GEOquery:::getAndParseGSEMatrices(...)
3. └─GEOquery:::getDirListing(sprintf(gdsurl, stub, GEO))
4. ├─xml2::read_html(url)
5. └─xml2:::read_html.default(url)
6. ├─base::suppressWarnings(...)
7. │ └─base::withCallingHandlers(...)
8. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
9. └─xml2:::read_xml.character(...)
10. └─xml2:::read_xml.connection(...)
11. ├─base::open(x, "rb")
12. └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mouse.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'mouse.Rmd'
--- re-building 'pbmc.Rmd' using rmarkdown
trying URL 'https://cf.10xgenomics.com/samples/cell-arc/2.0.0/pbmc_granulocyte_sorted_3k/pbmc_granulocyte_sorted_3k_filtered_feature_bc_matrix.h5'
Content type 'binary/octet-stream' length 38844318 bytes (37.0 MB)
==================================================
downloaded 37.0 MB
|
| | 0%
|
|========= | 12%
|
|================== | 25%
|
|========================== | 38%
|
|=================================== | 50%
|
|============================================ | 62%
|
|==================================================== | 75%
|
|============================================================= | 88%
|
|======================================================================| 100%
trying URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds'
Content type 'application/octet-stream' length 15045381 bytes (14.3 MB)
==================================================
downloaded 14.3 MB
--- finished re-building 'pbmc.Rmd'
SUMMARY: processing the following file failed:
'mouse.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.2.0
Check: installed package size
Result: NOTE
installed size is 20.9Mb
sub-directories of 1Mb or more:
libs 20.2Mb
Flavor: r-oldrel-macos-arm64
Version: 0.2.1
Check: installed package size
Result: NOTE
installed size is 21.3Mb
sub-directories of 1Mb or more:
libs 20.5Mb
Flavor: r-oldrel-macos-x86_64