Last updated on 2026-01-27 05:54:59 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.1 | 37.43 | 247.04 | 284.47 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.3.1 | 26.56 | 166.13 | 192.69 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.3.1 | 76.00 | 374.93 | 450.93 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 2.3.1 | 63.00 | 378.97 | 441.97 | ERROR | |
| r-devel-windows-x86_64 | 2.3.1 | 46.00 | 261.00 | 307.00 | NOTE | |
| r-patched-linux-x86_64 | 2.3.1 | 40.29 | 221.00 | 261.29 | NOTE | |
| r-release-linux-x86_64 | 2.3.1 | 31.83 | 220.05 | 251.88 | NOTE | |
| r-release-macos-arm64 | 2.3.1 | NOTE | ||||
| r-release-macos-x86_64 | 2.3.1 | 23.00 | 166.00 | 189.00 | NOTE | |
| r-release-windows-x86_64 | 2.3.1 | 45.00 | 250.00 | 295.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.3.1 | NOTE | ||||
| r-oldrel-macos-x86_64 | 2.3.1 | 27.00 | 124.00 | 151.00 | NOTE | |
| r-oldrel-windows-x86_64 | 2.3.1 | 61.00 | 334.00 | 395.00 | NOTE |
Version: 2.3.1
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘show_group_enrichment.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 2.3.1
Check: examples
Result: ERROR
Running examples in ‘sigminer-Ex.R’ failed
The error most likely occurred in:
> ### Name: sigprofiler
> ### Title: Extract Signatures with SigProfiler
> ### Aliases: sigprofiler sigprofiler_extract sigprofiler_import
> ### sigprofiler_reorder
>
> ### ** Examples
>
> if (FALSE) {
+ load(system.file("extdata", "toy_copynumber_tally_W.RData",
+ package = "sigminer", mustWork = TRUE
+ ))
+
+ reticulate::conda_list()
+
+ sigprofiler_extract(cn_tally_W$nmf_matrix, "~/test/test_sigminer",
+ use_conda = TRUE
+ )
+
+ sigprofiler_extract(cn_tally_W$nmf_matrix, "~/test/test_sigminer",
+ use_conda = FALSE, py_path = "/Users/wsx/anaconda3/bin/python"
+ )
+ }
>
> data("simulated_catalogs")
> sigprofiler_reorder(t(simulated_catalogs$set1))
Downloading reference file...
Warning in download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress) :
URL 'https://raw.githubusercontent.com/AlexandrovLab/SigProfilerMatrixGenerator/master/SigProfilerMatrixGenerator/references/matrix/BRCA_example/BRCA_example.SBS96.all': Timeout of 60 seconds was reached
Error in download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress) :
cannot open URL 'https://raw.githubusercontent.com/AlexandrovLab/SigProfilerMatrixGenerator/master/SigProfilerMatrixGenerator/references/matrix/BRCA_example/BRCA_example.SBS96.all'
Calls: sigprofiler_reorder -> <Anonymous> -> download.file
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.3.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.3.1
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
extdata 1.0Mb
help 1.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64