Last updated on 2025-06-07 18:50:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.34 | 30.31 | 178.72 | 209.03 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.34 | 20.74 | 111.87 | 132.61 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.34 | 349.80 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.34 | 336.15 | OK | |||
| r-devel-windows-x86_64 | 1.1.34 | 38.00 | 342.00 | 380.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.34 | 33.58 | 169.63 | 203.21 | OK | |
| r-release-linux-x86_64 | 1.1.34 | 27.84 | 170.37 | 198.21 | OK | |
| r-release-macos-arm64 | 1.1.34 | 156.00 | OK | |||
| r-release-macos-x86_64 | 1.1.34 | 224.00 | OK | |||
| r-release-windows-x86_64 | 1.1.34 | 37.00 | 231.00 | 268.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.34 | 112.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1.34 | 236.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.34 | 47.00 | 284.00 | 331.00 | NOTE |
Version: 1.1.34
Check: examples
Result: ERROR
Running examples in ‘warbleR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read_wave
> ### Title: A wrapper for tuneR's readWave that read sound files listed
> ### within selection tables
> ### Aliases: read_wave
>
> ### ** Examples
>
> {
+ # write wave files with lower case file extension
+ data(list = c("Phae.long1"))
+ writeWave(Phae.long1, file.path(tempdir(), "Phae.long1.wav"))
+
+ # read from selection table
+ read_wave(X = lbh_selec_table, index = 1, path = tempdir())
+
+ # from extended selection table
+ library(NatureSounds)
+ read_wave(X = lbh.est, index = 1)
+
+ # read WAV
+ filepath <- system.file("extdata", "recording.wav", package = "bioacoustics")
+ read_wave(filepath)
+
+ # read MP3
+ filepath <- system.file("extdata", "recording.mp3", package = "bioacoustics")
+ read_wave(filepath)
+
+ # URL file
+ read_wave(X = "https://www.xeno-canto.org/513948/download")
+ }
This function is slated for deprecation in future versions. Please use the function read_sound_file() instead.
This function is slated for deprecation in future versions. Please use the function read_sound_file() instead.
This function is slated for deprecation in future versions. Please use the function read_sound_file() instead.
This function is slated for deprecation in future versions. Please use the function read_sound_file() instead.
This function is slated for deprecation in future versions. Please use the function read_sound_file() instead.
Error in curl::curl_fetch_memory(url, handle = handle) :
Timeout was reached [www.xeno-canto.org]: Connection timed out after 10017 milliseconds
Calls: read_wave ... request_fetch.write_memory -> <Anonymous> -> raise_libcurl_error
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.34
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a_warbleR.Rmd’ using rmarkdown
--- finished re-building ‘a_warbleR.Rmd’
--- re-building ‘b_annotation_data_format.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/warbleR.Rcheck/vign_test/warbleR/vignettes/b_annotation_data_format_files/figure-html/annotations_8.22-1.png
400x280 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33814 bytes
Input file size = 33940 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21905
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21905
Output IDAT size = 21905 bytes (11909 bytes decrease)
Output file size = 21983 bytes (11957 bytes = 35.23% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/warbleR.Rcheck/vign_test/warbleR/vignettes/b_annotation_data_format_files/figure-html/annotations_8.23-1.png
400x280 pixels, 8 bits/pixel, 141 colors in palette
Input IDAT size = 39721 bytes
Input file size = 40282 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39231
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39231
Output IDAT size = 39231 bytes (490 bytes decrease)
Output file size = 39744 bytes (538 bytes = 1.34% decrease)
Quitting from b_annotation_data_format.Rmd:536-550 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://xeno-canto.org/15607/download'
---
Backtrace:
▆
1. └─warbleR::query_xc(qword = "nr:15607", download = TRUE, path = tempdir())
2. └─warbleR:::.pblapply(...)
3. └─base::lapply(X, FUN, ...)
4. └─warbleR (local) FUN(X[[i]], ...)
5. └─warbleR (local) xcFUN(results, x)
6. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'b_annotation_data_format.Rmd' failed with diagnostics:
cannot open URL 'https://xeno-canto.org/15607/download'
--- failed re-building ‘b_annotation_data_format.Rmd’
--- re-building ‘c_warbleR_workflow_02.Rmd’ using rmarkdown
--- finished re-building ‘c_warbleR_workflow_02.Rmd’
--- re-building ‘d_warbleR_workflow_03.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/warbleR.Rcheck/vign_test/warbleR/vignettes/d_warbleR_workflow_03_files/figure-html/unnamed-chunk-30-1.png
2200x1540 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 72078 bytes
Input file size = 72252 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63781
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63781
Output IDAT size = 63781 bytes (8297 bytes decrease)
Output file size = 63859 bytes (8393 bytes = 11.62% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/warbleR.Rcheck/vign_test/warbleR/vignettes/d_warbleR_workflow_03_files/figure-html/unnamed-chunk-31-1.png
2200x1540 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 69179 bytes
Input file size = 69353 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 60979
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 60979
Output IDAT size = 60979 bytes (8200 bytes decrease)
Output file size = 61057 bytes (8296 bytes = 11.96% decrease)
--- finished re-building ‘d_warbleR_workflow_03.Rmd’
SUMMARY: processing the following file failed:
‘b_annotation_data_format.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.34
Check: examples
Result: ERROR
Running examples in 'warbleR-Ex.R' failed
The error most likely occurred in:
> ### Name: read_wave
> ### Title: A wrapper for tuneR's readWave that read sound files listed
> ### within selection tables
> ### Aliases: read_wave
>
> ### ** Examples
>
> {
+ # write wave files with lower case file extension
+ data(list = c("Phae.long1"))
+ writeWave(Phae.long1, file.path(tempdir(), "Phae.long1.wav"))
+
+ # read from selection table
+ read_wave(X = lbh_selec_table, index = 1, path = tempdir())
+
+ # from extended selection table
+ library(NatureSounds)
+ read_wave(X = lbh.est, index = 1)
+
+ # read WAV
+ filepath <- system.file("extdata", "recording.wav", package = "bioacoustics")
+ read_wave(filepath)
+
+ # read MP3
+ filepath <- system.file("extdata", "recording.mp3", package = "bioacoustics")
+ read_wave(filepath)
+
+ # URL file
+ read_wave(X = "https://www.xeno-canto.org/513948/download")
+ }
This function is slated for deprecation in future versions. Please use the function read_sound_file() instead.
This function is slated for deprecation in future versions. Please use the function read_sound_file() instead.
This function is slated for deprecation in future versions. Please use the function read_sound_file() instead.
This function is slated for deprecation in future versions. Please use the function read_sound_file() instead.
This function is slated for deprecation in future versions. Please use the function read_sound_file() instead.
Warning in download.file(url = X, destfile = temp.file, quiet = TRUE, mode = "wb", :
URL 'https://xeno-canto.org/513948/download': Timeout of 60 seconds was reached
Error in download.file(url = X, destfile = temp.file, quiet = TRUE, mode = "wb", :
cannot open URL 'https://www.xeno-canto.org/513948/download'
Calls: read_wave -> read_sound_file -> download.file
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.34
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'a_warbleR.Rmd' using rmarkdown
--- finished re-building 'a_warbleR.Rmd'
--- re-building 'b_annotation_data_format.Rmd' using rmarkdown
Quitting from b_annotation_data_format.Rmd:536-550 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://www.xeno-canto.org/api/2/recordings?query=nr:15607&page=1'
---
Backtrace:
▆
1. └─warbleR::query_xc(qword = "nr:15607", download = TRUE, path = tempdir())
2. └─warbleR:::.pblapply(...)
3. └─base::lapply(X, FUN, ...)
4. └─warbleR (local) FUN(X[[i]], ...)
5. └─rjson::fromJSON(...)
6. ├─base::paste(readLines(file, warn = FALSE), collapse = "")
7. └─base::readLines(file, warn = FALSE)
8. └─base::file(con, "r")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'b_annotation_data_format.Rmd' failed with diagnostics:
cannot open the connection to 'https://www.xeno-canto.org/api/2/recordings?query=nr:15607&page=1'
--- failed re-building 'b_annotation_data_format.Rmd'
--- re-building 'c_warbleR_workflow_02.Rmd' using rmarkdown
--- finished re-building 'c_warbleR_workflow_02.Rmd'
--- re-building 'd_warbleR_workflow_03.Rmd' using rmarkdown
--- finished re-building 'd_warbleR_workflow_03.Rmd'
SUMMARY: processing the following file failed:
'b_annotation_data_format.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.34
Check: installed package size
Result: NOTE
installed size is 8.7Mb
sub-directories of 1Mb or more:
doc 6.6Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64