JANE News

Version Updates

0.1.0

• Initial public release

0.1.1

• Fix plotting scripts to include immediate call to on.exit to reset user settings
• Add testthat functionality for automatic testing of package functions

0.1.2

• Add import Rcpp and future to NAMESPACE

0.2.0

• Improve plotting function:
  • Add options for user-specified titles (i.e., main, xlab, and ylab)
  • Add option for user-specified colors for clusters

0.2.1

• summary.JANE now returns actor-specific uncertainty

1.0.0

• JANE is now able to handle weighted networks, specifically for applications that involve the presence of noise edges in the network

1.1.0

• Add importFrom progress progress_bar to NAMESPACE to address note in checks
• Add option to plotting function to remove noise edges if JANE was run with noise_weights = TRUE
• Add citation information

2.0.0

• Update prior specification functionality
• Make new S3 class for priors and initial values
• Improve documentation - add information about connection strength heterogeneity, fix priors in ‘details’ of specify_priors, and fix typos
• Add vignette “JANE User Guide”

2.1.0

• Add website with vignette to “URL” section of DESCRIPTION
• Fix bug in JANE when class is added to NULL optimal_starting
• Add more comprehensive tests
• Replace some helper functions with more numerically stable variants
• Use .registration = T for useDynLib
• @useDynLib only included once in zzz.R. Removed all other instances in other R scripts
• Create header file for helper functions
• Create helper functions for inverse logit, density for ZTP and log-normal, and solve_only_sympd (checks for sympd before running arma::solve)
• Update scripts to work with helper functions
• Fix deprecated methods::as(A, “dgCMatrix”) in JANE.R
• Update specify_priors and check_priors to check user input, also remove redundant code
• Add dimension checks for user supplied mus, omegas, and p in sim_A