JBrowseR: An R Interface to the JBrowse 2 Genome Browser
Provides an R interface to the JBrowse 2 genome browser. Enables embedding a JB2 genome browser in a Shiny app or R Markdown document. The browser can also be launched from an interactive R console. The browser can be loaded with a variety of common genomics data types, and can be used with a custom theme.
| Version: | 0.10.2 |
| Imports: | htmltools, htmlwidgets, reactR, stringr, magrittr, readr, jsonlite, httpuv, mime, cli, ids, dplyr |
| Suggests: | testthat (≥ 3.0.0), knitr, rmarkdown |
| Published: | 2023-12-20 |
| DOI: | 10.32614/CRAN.package.JBrowseR |
| Author: | Elliot Hershberg 
[aut],
Colin Diesh [aut,
cre],
the JBrowse 2 Team [aut] |
| Maintainer: | Colin Diesh <colin.diesh at gmail.com> |
| License: | Apache License (≥ 2) |
| URL: | https://gmod.github.io/JBrowseR/ https://github.com/GMOD/JBrowseR |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| In views: | Omics |
| CRAN checks: | JBrowseR results |
Documentation:
| Reference manual: | JBrowseR.html , JBrowseR.pdf |
| Vignettes: |
Introduction to JBrowseR (source, R code) Creating URLs (source, R code) Custom browser tutorial (source, R code) Advanced JSON tutorial (source, R code) |
Downloads:
| Package source: | JBrowseR_0.10.2.tar.gz |
| Windows binaries: | r-devel: JBrowseR_0.10.2.zip, r-release: JBrowseR_0.10.2.zip, r-oldrel: JBrowseR_0.10.2.zip |
| macOS binaries: | r-release (arm64): JBrowseR_0.10.2.tgz, r-oldrel (arm64): JBrowseR_0.10.2.tgz, r-release (x86_64): JBrowseR_0.10.2.tgz, r-oldrel (x86_64): JBrowseR_0.10.2.tgz |
| Old sources: | JBrowseR archive |
Reverse dependencies:
| Reverse imports: | viewpoly |
Linking:
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