VertexWiseR: Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal Surface

Provides functions to run statistical analyses on surface-based neuroimaging data, computing measures including cortical thickness and surface area of the whole-brain and of the hippocampi. It can make use of 'FreeSurfer', 'fMRIprep' and 'HCP' preprocessed datasets and 'HippUnfold' hippocampal segmentation outputs for a given sample by restructuring the data values into a single file. The single file can then be used by the package for analyses independently from its base dataset and without need for its access.

Version:	1.2.0
Depends:	R (≥ 4.0.0)
Imports:	ciftiTools, doParallel, doSNOW, foreach, freesurferformats, fs, gifti, grDevices, igraph, methods, plotly, png, rappdirs, reticulate, stats, stringr, utils
Suggests:	R.rsp
Published:	2024-12-12
DOI:	10.32614/CRAN.package.VertexWiseR
Author:	Junhong Yu [aut], Charly Billaud [aut, cre]
Maintainer:	Charly Billaud <charly.billaud at ntu.edu.sg>
License:	GPL-3
URL:	https://cogbrainhealthlab.github.io/VertexWiseR/
NeedsCompilation:	no
SystemRequirements:	Miniconda3 (v24.9.2), Python (<= v3.12), BrainStat (v0.4.2), vtk (v9.3.1)
Citation:	VertexWiseR citation info
Materials:	README NEWS
CRAN checks:	VertexWiseR results

Documentation:

Reference manual:	VertexWiseR.pdf
Vignettes:	Example analyses with VertexWiseR - Example 1 (source) Example analyses with VertexWiseR - Example 2 (source) Extracting surface data in VertexWiseR (source)

Downloads:

Package source:	VertexWiseR_1.2.0.tar.gz
Windows binaries:	r-devel: VertexWiseR_1.1.0.zip, r-release: VertexWiseR_1.1.0.zip, r-oldrel: VertexWiseR_1.2.0.zip
macOS binaries:	r-release (arm64): VertexWiseR_1.2.0.tgz, r-oldrel (arm64): VertexWiseR_1.2.0.tgz, r-release (x86_64): VertexWiseR_1.2.0.tgz, r-oldrel (x86_64): VertexWiseR_1.2.0.tgz
Old sources:	VertexWiseR archive

Linking:

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