2018-06-25 14:53 warnes * ChangeLog, NEWS, inst/ChangeLog, inst/NEWS: Move NEWS and ChangeLog to top level. 2018-06-25 14:52 warnes * ChangeLog, NEWS: Remove NEWS and ChangeLog soft links 2018-06-20 21:06 warnes * inst/ChangeLog: Update ChangeLog for gmodels 2.18.0. 2018-06-20 21:04 warnes * DESCRIPTION, inst/NEWS: Update DESCRIPTION and NEWS for gmodels 2.18.0. 2018-06-20 21:02 warnes * NAMESPACE: Add imports from stats package. 2018-06-20 20:51 warnes * DESCRIPTION, inst/ChangeLog: Update DESCRIPTION and ChangeLog for gmodels 2.16.1 2018-06-20 20:50 warnes * NAMESPACE: Remove obsolete functions. 2018-06-20 20:46 warnes * R/fit.contrast.R, man/ci.Rd, man/estimable.Rd, man/fit.contrast.Rd: Fix R CMD check issues. 2018-06-20 20:42 warnes * R/ci.R: Remove trailing whitespace 2018-06-20 20:40 warnes * R/est_p_ci.R: Use base::trimws() instead of gdata::trim() 2018-06-20 20:35 warnes * test: Remove duplicated/incorrect 'test' directory. 2017-06-12 23:53 warnes * DESCRIPTION: Update imports 2017-06-12 23:53 warnes * NAMESPACE: Add imports for base R packages to NAMESPACE 2017-06-05 21:27 warnes * inst/NEWS: Update NEWS and ChangeLog files for 2.18.0. 2016-08-15 19:11 warnes * test, test/lme-test.R, test/test_estimable_mlm.R: Add tests for mlm and (obsolete) lme 2016-08-15 19:05 warnes * R/est_p_ci.R: Add est_p_ci generic and lm method 2016-08-12 17:15 warnes * DESCRIPTION, NAMESPACE, R/ci.R, R/fit.contrast.R, inst/ChangeLog, inst/NEWS, man/ci.Rd, man/estimable.Rd, man/fit.contrast.Rd: Updates... 2015-07-22 00:53 warnes * DESCRIPTION: Update gmodels DESCRIPTION 2015-07-22 00:48 warnes * test, tests, tests/lme-test.R: Renamed 'test' directory to 'tests', commented out tests for lme4 which has a changed API 2015-07-20 23:38 warnes * DESCRIPTION, NAMESPACE: Changs to squash new R CMD check warnings 2015-07-19 03:22 warnes * DESCRIPTION, NAMESPACE, R/ci.R, R/est.mer.R, R/estimable.R, R/fit.contrast.R, R/to.est.R, inst/NEWS, man/ci.Rd, man/estimable.Rd, man/fit.contrast.Rd: - Removed references to 'mer' objects, sincel the nlme4 update is not backwards compatible with my code. - Removed 'require' calls. 2015-07-19 02:34 warnes * DESCRIPTION, inst/ChangeLog, inst/NEWS: Update DESCRIPTION, ChangeLog, and NEWS for gmodels 2.16.1 2015-07-19 02:30 warnes * R/ci.R, man/ci.Rd: ci.binom() was using an incorrect method for calculating binomial confidence interval. The revised code calculates the Clopper-Pearson 'exect' interval, which is *conservative* due to the discrete nature of the binomial distribution. 2015-05-02 17:38 warnes * Rename 'trunk' to 'pkg' for compatibility with R-forge 2015-04-06 21:52 warnes * Add ChangeLog files to repository 2014-07-24 15:18 warnes * Update NEWS for gmodels 2.16.0 2014-07-24 15:14 warnes * - Estimable now adds the class 'estimable' to returned objects. - New ci() method for estimable objects. - Minor improvemets to man page formatting. 2013-07-18 14:09 warnes * Looks like Brian Ripley repackaged for R 3.0.0 and bumped version number, so change it to 2.15.5 2013-07-18 13:57 warnes * Update for gmodels 2.15.4 2013-07-18 13:54 warnes * Update to current Rd syntax 2013-07-18 13:46 warnes * Correct bug in estimable.mlm 2013-07-15 18:13 warnes * Remove unused argument to ci.mer 2012-06-28 00:49 warnes * Update for gmodels version 2.15.3. 2012-06-28 00:47 warnes * Move percentile() function to a separate file. 2012-06-28 00:41 warnes * Update est.mer() to support new S4 "mer" class. 2012-06-28 00:40 warnes * Make lme4 example executable. 2012-06-27 22:42 warnes * Add test code submitted by Ariel.Muldoon@oregonstate.edu. 2012-04-19 22:09 warnes * Update for release 2.15.2 2012-04-19 22:07 warnes * Update version and date. 2012-04-19 22:06 warnes * The 'Design' package has been replaced my 'rms', so update man page references. 2012-04-19 22:05 warnes * More fixes for support of S4 'mer' class from lme4 package. 2012-04-19 21:13 warnes * Split long line. 2012-04-19 17:50 warnes * Changes to pass R CMD check 2011-12-14 18:17 warnes * Improve formatting of ci.mer(). 2011-12-14 18:14 warnes * Modify est.mer to work with recent lme4 'mer' S4 objects. 2011-01-16 22:17 warnes * Fix warnings reported by R CMD check. Update version number to 2.15.1. 2009-05-09 05:29 warnes * Add tests for lme4 'mer' objects 2009-05-09 05:04 warnes * Update for 2.15.0 2009-05-09 05:02 warnes * Update description for 2.15.0 2009-05-09 05:01 warnes * Add support for lme4's 'mer' objects 2009-05-09 05:00 warnes * Add support for lme4's 'mer' objects 2009-05-09 04:53 warnes * Fix .Rd syntax error 2009-05-09 04:37 warnes * Add softlinks for ChangeLog and NEWS to top level dir for convenience 2009-05-09 04:36 warnes * Move ChangeLog and NEWS files into inst directory 2009-05-09 04:00 warnes * Update Greg's email address 2008-04-10 14:05 warnes * Improve languages a bit 2008-01-02 16:56 warnes * Update Marc's email address 2007-12-12 21:16 warnes * Move copyright notice for Randall's contributions from License section to Author section of the DESCRIPTION file. 2007-12-07 22:21 warnes * Update DESCRIPTION and NEWS for release 2.14.1 2007-12-07 22:10 warnes * Correct minor typos in man page for estimable() 2007-12-07 22:09 warnes * Add support for lme models to estimable() 2007-12-07 22:07 warnes * Replace non-ascii characters in Soren's name with (equivalent?) ascii character to avoid character encoding issues. 2007-10-22 02:24 warnes * Clarify GPL version 2007-07-26 00:20 warnes * Add support for mlm to estimable(). 2007-07-26 00:10 warnes * Add estimable method for mlm objects 2007-03-09 22:35 warnes * Remove stray character 2007-03-09 20:10 warnes * Update NEWS file. 2007-03-09 20:07 warnes * Update version number 2007-03-09 20:06 warnes * Minor code formatting changes 2007-03-09 20:06 warnes * Flip lower and upper interval in ci.lmer(). Add example to man page. 2007-03-09 19:43 warnes * Fix some old email addressses that got missed 2006-11-29 00:11 warnes * Update for 2.13.1 2006-11-29 00:05 warnes * Correct declartion of S3 methods for estimable() 2006-11-29 00:05 warnes * Add additional suggested packages 2006-11-29 00:04 warnes * - Add generic - Fix code vs. doc inconsistiencies 2006-11-28 22:38 warnes * Remove extraneous comma that causes errors in R 2.5.0 2006-11-27 20:45 warnes * Update for 2.13.1 2006-11-27 20:36 warnes * Add missing export of methods for estimable() 2006-11-14 22:25 ggorjan * Removed executable property 2006-08-02 22:21 warnes * Update my email address 2006-06-06 19:17 nj7w * Updated ci, estimable and fit.contrast as per Randall Johnson 2006-06-05 21:00 nj7w * Additions as per Randall C Johnson 2006-06-05 20:59 nj7w * Additions as per Randall C Johnson 2006-06-05 20:57 nj7w * - New function to estimate CI's and p-values using mcmcsamp() from the Matrix package 2006-05-05 18:29 nj7w * Fixed an error: According to Marc Schwartz - there was an error when a matrix without dimnames(or names(dimnames)) was passed as x argument 2005-12-13 16:03 nj7w * Removed ChangeLog 2005-12-13 16:02 nj7w * Updated NEWS 2005-12-12 21:57 nj7w * Updated version number for CRAN 2005-12-04 06:27 warnes * Update for 2.11.0 2005-12-04 06:12 warnes * Integration of code changes suggested by Randall C Johnson to add support for lmer (lme version 4) objects to ci(), estimable(), and fit.contrast(). Addition of simplified coefficient specificaiton for estimable() based on a function provided by Randall C Johnson. It is now possible to do things like: estimable(reg, c("xB"=1,"xD"=-1) ) instead of: estimable(reg, c( 0, 1, 0, -1) ) which should make estimable much easier to use for large models. 2005-12-01 16:54 nj7w * Updated Greg's email address 2005-10-27 11:21 warnes * Update version number. Bump minor version since we added functionality. 2005-10-27 10:33 warnes * Add ci.binom() to NAMESPACE, bump version 2005-10-26 13:39 warnes * Add ci.binom 2005-10-25 21:18 warnes * Add gdata::nobs to import list. Needed by ci() 2005-09-12 15:44 nj7w * Updated Greg's email 2005-09-07 15:31 nj7w * Fixed man page 2005-09-06 21:34 nj7w * Updated DESCRIPTION 2005-09-06 21:34 nj7w * Added NEWS 2005-09-06 16:21 nj7w * Fixed the Package name 2005-09-02 23:10 nj7w * Added ChangeLog 2005-08-31 16:28 nj7w * Added DESCRIPTION file 2005-08-31 16:27 nj7w * removed DESCRIPTION.in 2005-07-11 21:35 nj7w * Revision based on Marc Schwartz's suggestions: 1) Added 'dnn' argument to enable specification of dimnames as per table() 2) Corrected bug in SPSS output for 1d table, where proportions were being printed and not percentages ('%' output) 2005-06-09 14:20 nj7w * Updating the version number, and various help files to synchronize splitting of gregmisc bundle in 4 individual components. 2005-06-09 14:13 nj7w * Updates by Marc Schwartz: CrossTable: # Revision 2.0 2005/04/27 # Added 'format = "d"' to all table count output # so that large integers do not print in # scientific notation 2005-05-13 18:59 nj7w * 1) Using dQuote.ascii function in read.xls as the new version of dQuote doesn't work proprly with UTF-8 locale. 2) Modified CrossTable.Rd usage in gmodels 3) Modified heatmap.2 usage in gplots. 2005-05-11 13:51 warnes * Add dependency on gdata::frameApply. 2005-03-31 20:32 warnes * Add ceofFrame function to NAMESPACE 2005-03-31 19:05 warnes * coefFrame example needs to properly load ELISA data from gtools package 2005-03-31 18:31 warnes * Ensure that each file has $Id$ header, and no $Log$ 2005-03-31 18:30 warnes * Add coefFrame() function contributed by Jim Rogers 2005-01-18 19:53 warnes * Removed Windows Line Endings 2005-01-14 21:40 nj7w * Updated the manual to reflect prop.chisq change in its R file. 2005-01-14 19:14 warnes * Nitin added display of the Chisquare contribution of each cell, as suggested by Greg Snow. 2005-01-12 20:50 warnes * Add dependency on R 1.9.0+ to prevent poeple from installing on old versions of R which don't support namespaces. 2004-12-23 19:32 nj7w * Split the function print.CrossTable.vector in two parts - for SAS behaiour and SPSS behaviour. Also put the code of printing statistics in a function 'print.statistics' 2004-12-21 22:38 warnes * Added & extended changes made by Nitin to implement 'SPSS' format, as suggested by Dirk Enzmann . 2004-09-30 21:03 warneg * Fix typos. 2004-09-27 21:01 warneg * Updated to pass R CMD check. 2004-09-03 22:44 warneg * Add explicit package to call to quantcut in example. 2004-09-03 17:27 warneg * initial bundle checkin 2004-09-02 17:14 warneg * Initial revision 2004-05-25 02:57 warnes * Updates from Mark Schwartz. 2004-04-13 11:41 warnes * Fix latex warning: it doesn't like double subscripts. 2004-03-26 22:28 warnes * Reflect movement of code from 'mva' package to 'stats' in R 1.9.0. 2004-03-25 20:09 warnes * - Estimable was reporting sqrt(X^2) rather than X^2 in the output. - Provide latex math markup for linear algebra expressions in help text. - Other clarifications in help text 2004-03-25 18:17 warnes * Add enhancements to estimable() provided by S�ren H�jsgaard \email{sorenh@agrsci.dk}: I have made a modified version of the function [..] which 1) also works on geese and gee objects and 2) can test hypotheses af the forb L * beta = beta0 both as a single Wald test and row-wise for each row in L. 2003-11-17 21:40 warnes * - Fix incorrect handling of glm objects by fit.contrast, as reported by Ulrich Halekoh, Phd . - Add regression test code to for this bug. 2003-08-07 03:49 warnes * - Fixed incorrect denominator in standard error for mean in ci.default. 2003-04-22 17:24 warnes * - the variable 'df' was used within the lme code section overwriting the argument 'df'. 2003-03-12 17:58 warnes * - Fixed a typo in the example - Added to lme example 2003-03-07 15:48 warnes * - Minor changes to code to allow the package to be provided as an S-Plus chapter. 2003-01-30 21:53 warnes * - Renamed 'contrast.lm' to 'fit.contrast'. This new name is more descriptive and makes it easier to create and use methods for other classes, eg lme. - Enabled fit.contrast for lme object now that Doug Bates has provided the necessary support for contrasts in the nlme package. - New contrast.lm function which generates a 'depreciated' warning and calls fit.contrast - Updated help text to match changes. 2003-01-30 21:41 warnes * - Removed argument 'correct' and now print separate corrected values for 2 x 2 tables. - Added arguments 'prop.r', 'prop.c' and 'prop.t' to toggle printing of row, col and table percentages. Default is TRUE. - Added argument 'fisher' to toggle fisher exact test. Default is FALSE. - Added McNemar test to statistics and argument 'mcnemar' to toggle test. Default is FALSE. - Added code to generate an invisible return list containing table counts, proportions and the results of the appropriate statistical tests. 2003-01-30 14:58 warnes * - Added explicit check to ensure that the number of specified contrasts is less than or equal to the ncol - 1. Previously, this failed with an obtuse error message when the contrast matrix had row names, and silently dropped contrasts over ncol-1. 2002-11-04 14:13 warnes * - Moved fisher.test() to after table is printed, so that table is still printed in the event that fisher.test() results in errors. 2002-10-29 23:06 warnes * - Fixes to fast.svd to make it actually work. - Updates to man page to fix mistmatches between code and docs and to fix warnings. 2002-10-29 23:00 warnes * - Moved make.contrasts to a separate file. - Enhanced make contrasts to better label contrast matrix, to give how.many a default value, and to coerce vectors into row matrixes. - Added help page for make.contrasts. - Added link from contrasts.lm seealso to make.contrasts. 2002-10-29 19:29 warnes * Initial checkin for fast.prcomp() and fast.svd(). 2002-09-26 12:11 warnes * - Added note and example code to illustrate how to properly compute contrasts for the first factor in the model. 2002-09-24 19:12 warnes * - Fixed a typo. 2002-09-23 14:27 warnes * - Fixed syntax errors in barplot2.Rd and CrossTable.Rd - Fixed incorrect translation of 'F' (distribution) to 'FALSE' in glh.test.Rd 2002-09-23 13:59 warnes * - Modified all files to include CVS Id and Log tags. 2002-09-23 13:38 warnes * - Added CrossTable() and barplot2() code and docs contributed by Marc Schwartz. - Permit combinations() to be used when r>n provided repeat.allowed=TRUE - Bumped up version number 2002-08-01 19:37 warnes * - Corrected documentation mismatch for ci, ci.default. - Replaced all occurences of '_' for assignment with '<-'. - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE' with the spelled out version. - Updaded version number and date. 2002-04-09 00:51 warneg * Checkin for version 0.5.3 2002-03-26 21:22 warneg * - Changed methods to include '...' to match the generic. - Updated for version 0.5.1 2002-03-26 15:30 warneg * Removed incorrect link to 'contrast' from seealso. 2002-02-20 20:09 warneg * Minor changes, typo and formatting fixes. 2002-01-17 23:51 warneg * - Fixed errror in last example by adding 'conf.int' parameter to 'estimable' call. 2002-01-17 23:42 warneg * - Fixed typo in code that resulted in an syntax error. 2002-01-10 17:35 warneg * - print.glh.test() was using cat() to printing the call. This didn't work and generated an error. 2001-12-19 20:06 warneg * - Fixed display of formulae. - Added description of return value 2001-12-19 20:05 warneg * - Removed extra element of return object. 2001-12-18 22:14 warneg * - Updated documentation to reflect change of parameters from 'alpha' to 'conf.int', including the new optional status of the confidence intervals. 2001-12-18 22:12 warneg * - Modified to make confidence intervals optional. Changed 'alpha' parameter giving significance level to 'conf.int' giving confidence level. 2001-12-18 21:36 warneg * - Added summary.glh.test to alias, usage, and example sections. 2001-12-18 21:34 warneg * - Modified to work correctly when obj is of class 'aov' by specifying summary.lm instead of summary. This ensures that the summary object has the fields we need. - Moved detailed reporting of results from 'print' to 'summary' function and added a simpler report to 'print' 2001-12-18 21:27 warneg * - Modified to work correctly when obj is of class 'aov' by specifying summary.lm instead of summary. This ensures that the summary object has the fields we need. 2001-12-18 00:45 warneg * Initial checkin. 2001-12-17 18:59 warneg * - Fixed spelling errors. 2001-12-17 18:52 warneg * - Fixed the link to contrasts.lm. - Rephrased title/description to be more clear. 2001-12-10 19:35 warneg * Renamed 'contrsts.coeff.Rd' to 'estimable.Rd' corresponding to function rename. 2001-12-10 19:26 warneg * renamed from contrast.coeff.R to estimable.R (incorrectly via contrast.lm.R) 2001-12-07 19:50 warneg * - Added text noting that lme is now supported. 2001-12-07 19:19 warneg * - Fixed typo: DF column was being filled in with p-value. 2001-12-07 18:49 warneg * - Added ci.lme method to handle lme objects. 2001-10-16 23:15 warneg * Fixed unbalanced brace. 2001-08-25 05:52 warneg * - Added CVS header. - Added my email address. 2001-05-30 13:23 warneg * Initial revision