phylosem 1.1.4

• removing checkDepPackageVersion(dep_pkg="Matrix", this_pkg="TMB") from .onLoad() as requested by K. Kristensen

phylosem 1.1.3

• Removing fit_tmb to simplify code and remove unnecessary warnings
• Adding codecov and extra tests
• Fixing R-CMD-check to force build Matrix/TMB from source

phylosem 1.1.2

• Adding new functions to provide warning if Matrix version doesn’t match what’s expected by TMB

phylosem 1.1.1

• Re-adding phylosignal as SUGGESTS
• Re-adding phylosignal to Fisheries vignette
• adding arguemnt what to as_phylo4d to allow easy extraction of standard errors

phylosem 1.1.0

• Adding new S3 generic functions: logLik and vcov
• Adding vignette “fisheries” associated with paper “Trees for fishes: The neglected role for phylogenetic comparative methods in fisheries science” accepted at Fish and Fisheries

phylosem 1.0.2

• Fixed bug arising when data are missing for observations in the earliest tips and for the first inputted variable
• Updating vignette to show confidence intervals on alpha/kappa/lambda as well as lnalppha/lnkappa/logitlambda

phylosem 1.0.1

• Address request from CRAN to use Suggests packages conditionally in examples
• Continuing to use Suggests packages unconditionally in vignettes based on Wickham guidance online

phylosem 1.0.0

• Attempting to fix warnings