Last updated on 2025-09-19 18:50:05 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [82s/124s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.678, system: 0.079, elapsed: 2.775 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.289, system: 0.256, elapsed: 15.104 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.018, elapsed: 0.312 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.829, system: 0.239, elapsed: 6.176 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.003, elapsed: 0.185 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.691, system: 0.627, elapsed: 25.382 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.558, system: 0.059, elapsed: 2.468 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.293, system: 0.233, elapsed: 13.803 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.015, elapsed: 0.312 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.759, system: 0.196, elapsed: 5.589 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.002, elapsed: 0.234 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.490, system: 0.533, elapsed: 23.285 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.510, system: 0.030, elapsed: 2.172 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.873, system: 0.076, elapsed: 13.993 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.010, elapsed: 0.340 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.641, system: 0.178, elapsed: 6.584 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.003, elapsed: 0.318 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.126, system: 0.208, elapsed: 1.249 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.105, system: 0.526, elapsed: 25.672 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.498, system: 0.036, elapsed: 2.247 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.390, system: 0.336, elapsed: 15.730 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.017, elapsed: 0.275 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.939, system: 0.278, elapsed: 5.719 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.010, elapsed: 0.273 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.477, system: 0.554, elapsed: 16.473 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.313, system: 1.274, elapsed: 41.669 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/121s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.715, system: 0.089, elapsed: 2.170 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.182, system: 0.297, elapsed: 11.249 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.019, elapsed: 0.230 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.738, system: 0.295, elapsed: 4.850 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.008, elapsed: 0.191 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.522, system: 0.738, elapsed: 19.370 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.683, system: 0.081, elapsed: 2.091 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.970, system: 0.112, elapsed: 14.700 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.012, elapsed: 0.311 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.592, system: 0.159, elapsed: 5.364 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.300 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.111, system: 0.398, elapsed: 23.477 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.600, system: 0.048, elapsed: 2.954 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.884, system: 0.076, elapsed: 14.883 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.182, system: 0.011, elapsed: 0.331 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.494, system: 0.150, elapsed: 5.761 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.009, elapsed: 0.246 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.031, system: 0.217, elapsed: 0.959 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.991, system: 0.546, elapsed: 26.241 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.451, system: 0.028, elapsed: 2.052 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.878, system: 0.051, elapsed: 14.696 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.011, elapsed: 0.365 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.539, system: 0.155, elapsed: 6.585 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.004, elapsed: 0.295 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.158, system: 0.464, elapsed: 19.835 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.010, system: 0.736, elapsed: 44.919 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64